An In vitro Study of Bio-Control and Plant Growth Promotion Potential of Salicaceae Endophytes.
Identifieur interne : 001531 ( Main/Exploration ); précédent : 001530; suivant : 001532An In vitro Study of Bio-Control and Plant Growth Promotion Potential of Salicaceae Endophytes.
Auteurs : Shyam L. Kandel [États-Unis] ; Andrea Firrincieli [Italie] ; Pierre M. Joubert [États-Unis] ; Patricia A. Okubara [États-Unis] ; Natalie D. Leston [États-Unis] ; Kendra M. Mcgeorge [États-Unis] ; Giuseppe S. Mugnozza [Italie] ; Antoine Harfouche [Italie] ; Soo-Hyung Kim [États-Unis] ; Sharon L. Doty [États-Unis]Source :
- Frontiers in microbiology [ 1664-302X ] ; 2017.
Abstract
Microbial communities in the endosphere of Salicaceae plants, poplar (Populus trichocarpa) and willow (Salix sitchensis), have been demonstrated to be important for plant growth promotion, protection from biotic and abiotic stresses, and degradation of toxic compounds. Our study aimed to investigate bio-control activities of Salicaceae endophytes against various soil borne plant pathogens including Rhizoctonia solani AG-8, Fusarium culmorum, Gaeumannomyces graminis var. tritici, and Pythium ultimum. Additionally, different plant growth promoting traits such as biological nitrogen fixation (BNF), indole-3-acetic acid (IAA) biosynthesis, phosphate solubilization, and siderophore production were assessed in all bio-control positive strains. Burkholderia, Rahnella, Pseudomonas, and Curtobacterium were major endophyte genera that showed bio-control activities in the in-vitro assays. The bio-control activities of Burkholderia strains were stronger across all tested plant pathogens as compared to other stains. Genomes of sequenced Burkholderia strains WP40 and WP42 were surveyed to identify the putative genes involved in the bio-control activities. The ocf and hcnABC gene clusters responsible for biosynthesis of the anti-fungal metabolites, occidiofungin and hydrogen cyanide, are present in the genomes of WP40 and WP42. Nearly all endophyte strains showing the bio-control activities produced IAA, solubilized tricalcium phosphate, and synthesized siderophores in the culture medium. Moreover, some strains reduced acetylene into ethylene in the acetylene reduction assay, a common assay used for BNF. Salicaceae endophytes could be useful for bio-control of various plant pathogens, and plant growth promotion possibly through the mechanisms of BNF, IAA production, and nutrient acquisition.
DOI: 10.3389/fmicb.2017.00386
PubMed: 28348550
PubMed Central: PMC5347143
Affiliations:
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Kandel</name><affiliation wicri:level="2"><nlm:affiliation>School of Environmental and Forest Sciences, College of the Environment, University of Washington Seattle, WA, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Environmental and Forest Sciences, College of the Environment, University of Washington Seattle, WA</wicri:regionArea><placeName><region type="state">Washington (État)</region></placeName></affiliation></author><author><name sortKey="Firrincieli, Andrea" sort="Firrincieli, Andrea" uniqKey="Firrincieli A" first="Andrea" last="Firrincieli">Andrea Firrincieli</name><affiliation wicri:level="1"><nlm:affiliation>Department for Innovation in Biological, Agro-Food and Forest Systems, University of Tuscia Viterbo, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department for Innovation in Biological, Agro-Food and Forest Systems, University of Tuscia Viterbo</wicri:regionArea><wicri:noRegion>University of Tuscia Viterbo</wicri:noRegion></affiliation></author><author><name sortKey="Joubert, Pierre M" sort="Joubert, Pierre M" uniqKey="Joubert P" first="Pierre M" last="Joubert">Pierre M. Joubert</name><affiliation wicri:level="2"><nlm:affiliation>Department of Biology, University of Washington Seattle, WA, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biology, University of Washington Seattle, WA</wicri:regionArea><placeName><region type="state">Washington (État)</region></placeName></affiliation></author><author><name sortKey="Okubara, Patricia A" sort="Okubara, Patricia A" uniqKey="Okubara P" first="Patricia A" last="Okubara">Patricia A. 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Leston</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant Pathology, Washington State University Pullman, WA, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology, Washington State University Pullman, WA</wicri:regionArea><placeName><region type="state">Washington (État)</region></placeName></affiliation></author><author><name sortKey="Mcgeorge, Kendra M" sort="Mcgeorge, Kendra M" uniqKey="Mcgeorge K" first="Kendra M" last="Mcgeorge">Kendra M. Mcgeorge</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant Pathology, Washington State University Pullman, WA, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology, Washington State University Pullman, WA</wicri:regionArea><placeName><region type="state">Washington (État)</region></placeName></affiliation></author><author><name sortKey="Mugnozza, Giuseppe S" sort="Mugnozza, Giuseppe S" uniqKey="Mugnozza G" first="Giuseppe S" last="Mugnozza">Giuseppe S. Mugnozza</name><affiliation wicri:level="1"><nlm:affiliation>Department for Innovation in Biological, Agro-Food and Forest Systems, University of Tuscia Viterbo, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department for Innovation in Biological, Agro-Food and Forest Systems, University of Tuscia Viterbo</wicri:regionArea><wicri:noRegion>University of Tuscia Viterbo</wicri:noRegion></affiliation></author><author><name sortKey="Harfouche, Antoine" sort="Harfouche, Antoine" uniqKey="Harfouche A" first="Antoine" last="Harfouche">Antoine Harfouche</name><affiliation wicri:level="1"><nlm:affiliation>Department for Innovation in Biological, Agro-Food and Forest Systems, University of Tuscia Viterbo, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department for Innovation in Biological, Agro-Food and Forest Systems, University of Tuscia Viterbo</wicri:regionArea><wicri:noRegion>University of Tuscia Viterbo</wicri:noRegion></affiliation></author><author><name sortKey="Kim, Soo Hyung" sort="Kim, Soo Hyung" uniqKey="Kim S" first="Soo-Hyung" last="Kim">Soo-Hyung Kim</name><affiliation wicri:level="2"><nlm:affiliation>School of Environmental and Forest Sciences, College of the Environment, University of Washington Seattle, WA, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Environmental and Forest Sciences, College of the Environment, University of Washington Seattle, WA</wicri:regionArea><placeName><region type="state">Washington (État)</region></placeName></affiliation></author><author><name sortKey="Doty, Sharon L" sort="Doty, Sharon L" uniqKey="Doty S" first="Sharon L" last="Doty">Sharon L. Doty</name><affiliation wicri:level="2"><nlm:affiliation>School of Environmental and Forest Sciences, College of the Environment, University of Washington Seattle, WA, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Environmental and Forest Sciences, College of the Environment, University of Washington Seattle, WA</wicri:regionArea><placeName><region type="state">Washington (État)</region></placeName></affiliation></author></analytic><series><title level="j">Frontiers in microbiology</title><idno type="ISSN">1664-302X</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Microbial communities in the endosphere of Salicaceae plants, poplar (<i>Populus trichocarpa</i>) and willow (<i>Salix sitchensis</i>), have been demonstrated to be important for plant growth promotion, protection from biotic and abiotic stresses, and degradation of toxic compounds. Our study aimed to investigate bio-control activities of Salicaceae endophytes against various soil borne plant pathogens including <i>Rhizoctonia solani</i> AG-8, <i>Fusarium culmorum, Gaeumannomyces graminis</i> var. <i>tritici</i>, and <i>Pythium ultimum</i>. Additionally, different plant growth promoting traits such as biological nitrogen fixation (BNF), indole-3-acetic acid (IAA) biosynthesis, phosphate solubilization, and siderophore production were assessed in all bio-control positive strains. <i>Burkholderia, Rahnella, Pseudomonas</i>, and <i>Curtobacterium</i> were major endophyte genera that showed bio-control activities in the <i>in-vitro</i> assays. The bio-control activities of <i>Burkholderia</i> strains were stronger across all tested plant pathogens as compared to other stains. Genomes of sequenced <i>Burkholderia</i> strains WP40 and WP42 were surveyed to identify the putative genes involved in the bio-control activities. The <i>ocf</i> and <i>hcnABC</i> gene clusters responsible for biosynthesis of the anti-fungal metabolites, occidiofungin and hydrogen cyanide, are present in the genomes of WP40 and WP42. Nearly all endophyte strains showing the bio-control activities produced IAA, solubilized tricalcium phosphate, and synthesized siderophores in the culture medium. Moreover, some strains reduced acetylene into ethylene in the acetylene reduction assay, a common assay used for BNF. Salicaceae endophytes could be useful for bio-control of various plant pathogens, and plant growth promotion possibly through the mechanisms of BNF, IAA production, and nutrient acquisition.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">28348550</PMID><DateRevised><Year>2020</Year><Month>10</Month><Day>01</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1664-302X</ISSN><JournalIssue CitedMedium="Print"><Volume>8</Volume><PubDate><Year>2017</Year></PubDate></JournalIssue><Title>Frontiers in microbiology</Title><ISOAbbreviation>Front Microbiol</ISOAbbreviation></Journal><ArticleTitle>An <i>In vitro</i> Study of Bio-Control and Plant Growth Promotion Potential of Salicaceae Endophytes.</ArticleTitle><Pagination><MedlinePgn>386</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3389/fmicb.2017.00386</ELocationID><Abstract><AbstractText>Microbial communities in the endosphere of Salicaceae plants, poplar (<i>Populus trichocarpa</i>) and willow (<i>Salix sitchensis</i>), have been demonstrated to be important for plant growth promotion, protection from biotic and abiotic stresses, and degradation of toxic compounds. Our study aimed to investigate bio-control activities of Salicaceae endophytes against various soil borne plant pathogens including <i>Rhizoctonia solani</i> AG-8, <i>Fusarium culmorum, Gaeumannomyces graminis</i> var. <i>tritici</i>, and <i>Pythium ultimum</i>. Additionally, different plant growth promoting traits such as biological nitrogen fixation (BNF), indole-3-acetic acid (IAA) biosynthesis, phosphate solubilization, and siderophore production were assessed in all bio-control positive strains. <i>Burkholderia, Rahnella, Pseudomonas</i>, and <i>Curtobacterium</i> were major endophyte genera that showed bio-control activities in the <i>in-vitro</i> assays. The bio-control activities of <i>Burkholderia</i> strains were stronger across all tested plant pathogens as compared to other stains. Genomes of sequenced <i>Burkholderia</i> strains WP40 and WP42 were surveyed to identify the putative genes involved in the bio-control activities. The <i>ocf</i> and <i>hcnABC</i> gene clusters responsible for biosynthesis of the anti-fungal metabolites, occidiofungin and hydrogen cyanide, are present in the genomes of WP40 and WP42. Nearly all endophyte strains showing the bio-control activities produced IAA, solubilized tricalcium phosphate, and synthesized siderophores in the culture medium. Moreover, some strains reduced acetylene into ethylene in the acetylene reduction assay, a common assay used for BNF. Salicaceae endophytes could be useful for bio-control of various plant pathogens, and plant growth promotion possibly through the mechanisms of BNF, IAA production, and nutrient acquisition.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Kandel</LastName><ForeName>Shyam L</ForeName><Initials>SL</Initials><AffiliationInfo><Affiliation>School of Environmental and Forest Sciences, College of the Environment, University of Washington Seattle, WA, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Firrincieli</LastName><ForeName>Andrea</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department for Innovation in Biological, Agro-Food and Forest Systems, University of Tuscia Viterbo, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Joubert</LastName><ForeName>Pierre M</ForeName><Initials>PM</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Washington Seattle, WA, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Okubara</LastName><ForeName>Patricia A</ForeName><Initials>PA</Initials><AffiliationInfo><Affiliation>Wheat Health, Genetics and Quality Research Unit, USDA-ARS Pullman, WA, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Leston</LastName><ForeName>Natalie D</ForeName><Initials>ND</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, Washington State University Pullman, WA, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>McGeorge</LastName><ForeName>Kendra M</ForeName><Initials>KM</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, Washington State University Pullman, WA, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mugnozza</LastName><ForeName>Giuseppe S</ForeName><Initials>GS</Initials><AffiliationInfo><Affiliation>Department for Innovation in Biological, Agro-Food and Forest Systems, University of Tuscia Viterbo, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Harfouche</LastName><ForeName>Antoine</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department for Innovation in Biological, Agro-Food and Forest Systems, University of Tuscia Viterbo, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kim</LastName><ForeName>Soo-Hyung</ForeName><Initials>SH</Initials><AffiliationInfo><Affiliation>School of Environmental and Forest Sciences, College of the Environment, University of Washington Seattle, WA, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Doty</LastName><ForeName>Sharon L</ForeName><Initials>SL</Initials><AffiliationInfo><Affiliation>School of Environmental and Forest Sciences, College of the Environment, University of Washington Seattle, WA, USA.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>03</Month><Day>13</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Front Microbiol</MedlineTA><NlmUniqueID>101548977</NlmUniqueID><ISSNLinking>1664-302X</ISSNLinking></MedlineJournalInfo><CommentsCorrectionsList><CommentsCorrections RefType="ErratumIn"><RefSource>Front Microbiol. 2018 Sep 05;9:2067</RefSource><PMID Version="1">30224912</PMID></CommentsCorrections></CommentsCorrectionsList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Burkholderia</Keyword><Keyword MajorTopicYN="N">Salicaceae endophytes</Keyword><Keyword MajorTopicYN="N">bio-control</Keyword><Keyword MajorTopicYN="N">soil borne plant pathogens</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2016</Year><Month>09</Month><Day>01</Day></PubMedPubDate><PubMedPubDate 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Kandel</name></region><name sortKey="Doty, Sharon L" sort="Doty, Sharon L" uniqKey="Doty S" first="Sharon L" last="Doty">Sharon L. Doty</name><name sortKey="Joubert, Pierre M" sort="Joubert, Pierre M" uniqKey="Joubert P" first="Pierre M" last="Joubert">Pierre M. Joubert</name><name sortKey="Kim, Soo Hyung" sort="Kim, Soo Hyung" uniqKey="Kim S" first="Soo-Hyung" last="Kim">Soo-Hyung Kim</name><name sortKey="Leston, Natalie D" sort="Leston, Natalie D" uniqKey="Leston N" first="Natalie D" last="Leston">Natalie D. Leston</name><name sortKey="Mcgeorge, Kendra M" sort="Mcgeorge, Kendra M" uniqKey="Mcgeorge K" first="Kendra M" last="Mcgeorge">Kendra M. Mcgeorge</name><name sortKey="Okubara, Patricia A" sort="Okubara, Patricia A" uniqKey="Okubara P" first="Patricia A" last="Okubara">Patricia A. Okubara</name></country><country name="Italie"><noRegion><name sortKey="Firrincieli, Andrea" sort="Firrincieli, Andrea" uniqKey="Firrincieli A" first="Andrea" last="Firrincieli">Andrea Firrincieli</name></noRegion><name sortKey="Harfouche, Antoine" sort="Harfouche, Antoine" uniqKey="Harfouche A" first="Antoine" last="Harfouche">Antoine Harfouche</name><name sortKey="Mugnozza, Giuseppe S" sort="Mugnozza, Giuseppe S" uniqKey="Mugnozza G" first="Giuseppe S" last="Mugnozza">Giuseppe S. Mugnozza</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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